[ckan-dev] mod_wsgi error and mako templates
McDonaldR
McDonaldR at angus.gov.uk
Fri Feb 22 08:16:34 UTC 2019
To complete the tale…
I asked our server supplier to restore the VM to its last working state. Unfortunately they had already discarded that backup so all I had were backups of a broken system. To mangle some metaphors desperate times lent me wings and so I decided to upgrade from a broken 2.7.5 to a hopefully working 2.8.2. Hope springs eternal but in this case it was short lived. At least I had a different error message though…
mod_wsgi (pid=2900): Exception occurred processing WSGI script '/etc/ckan/default/apache.wsgi'.
Traceback (most recent call last):
File "/etc/ckan/default/apache.wsgi", line 10, in <module>
application = loadapp('config:%s' % config_filepath)
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", line 247, in loadapp
return loadobj(APP, uri, name=name, **kw)
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", line 272, in loadobj
return context.create()
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", line 710, in create
return self.object_type.invoke(self)
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", line 146, in invoke
return fix_call(context.object, context.global_conf, **context.local_conf)
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/paste/deploy/util.py", line 55, in fix_call
val = callable(*args, **kw)
File "/usr/lib/ckan/default/src/ckan/ckan/config/middleware/__init__.py", line 55, in make_app
load_environment(conf, app_conf)
File "/usr/lib/ckan/default/src/ckan/ckan/config/environment.py", line 112, in load_environment
p.load_all()
File "/usr/lib/ckan/default/src/ckan/ckan/plugins/core.py", line 130, in load_all
unload_all()
File "/usr/lib/ckan/default/src/ckan/ckan/plugins/core.py", line 183, in unload_all
unload(*reversed(_PLUGINS))
File "/usr/lib/ckan/default/src/ckan/ckan/plugins/core.py", line 211, in unload
plugins_update()
File "/usr/lib/ckan/default/src/ckan/ckan/plugins/core.py", line 122, in plugins_update
environment.update_config()
File "/usr/lib/ckan/default/src/ckan/ckan/config/environment.py", line 223, in update_config
search.check_solr_schema_version()
File "/usr/lib/ckan/default/src/ckan/ckan/lib/search/__init__.py", line 296, in check_solr_schema_version
tree = xml.dom.minidom.parseString(res.read())
File "/usr/lib/python2.7/xml/dom/minidom.py", line 1928, in parseString
return expatbuilder.parseString(string)
File "/usr/lib/python2.7/xml/dom/expatbuilder.py", line 940, in parseString
return builder.parseString(string)
File "/usr/lib/python2.7/xml/dom/expatbuilder.py", line 223, in parseString
parser.Parse(string, True)
ExpatError: not well-formed (invalid token): line 37, column 4
Every post on the internet about the apache.wsgi file has been read and the file scrutinised minutely. It’s all good. What was not so good was the realisation after the fact that the SOLR schema needed to be updated from 2.7 to 2.8. A good few hours we spent working that out. If everything was running on the same box then then it would all be much easier, I guess, and if I had a better understanding of how CKAN components fitted together I could probably fix these problems much quicker. So, in the end, copying the new SOLR schema.xml file to the correct location and restarting the services got my site back up and running after a week of downtime. Everything was almost perfect. Perfect but for the large grey button now floating in the middle of my home page (http://opendata.angus.gov.uk). This, I think, is something to do with my custom theme and probably requires some updates to CSS and template files. I’ll be asking questions in another email thread shortly.
Lessons learned
· Find out how long your backups are retained for when the upgrade goes awry
· Get a restore done before the last available date
· The simple six-step upgrade process is never as simple as it makes out in the documentation – budget some time accordingly
· Read the notes for a source install even if you’ve done a package install as there is more detail on how different components work together
Ross
From: ckan-dev [mailto:ckan-dev-bounces at lists.okfn.org] On Behalf Of McDonaldR
Sent: 14 February 2019 11:06
To: CKAN Development Discussions
Subject: Re: [ckan-dev] mod_wsgi error and mako templates
Hello both and thanks for the response
I installed using the .deb package and verified that it was indeed the 2.7.5 package I was installing.
I restarted both nginx and apache2.
I activate my virtualenv with “. /usr/lib/ckan/default/bin/activate”
“pip freeze” returns:
amqp==1.4.9
amqplib==1.0.2
anyjson==0.3.3
Babel==2.3.4
Beaker==1.9.0
billiard==3.3.0.23
bleach==2.1.3
celery==3.1.25
certifi==2018.4.16
chardet==3.0.4
-e git+https://github.com/ckan/ckan@2287b2ac0ca20938529cd3ab17215cd8bf6e6fe5#egg=ckan
# Editable install with no version control (ckanext-angus-theme==0.0.1)
-e /usr/lib/ckan/default/src/ckanext-angus_theme
-e git+http://github.com/ckan/ckanext-archiver.git@bfb970dd169f6a6045329c12f23769b65141d9d8#egg=ckanext_archiver
ckanext-geoview==0.0.12
-e git+http://github.com/ckan/ckanext-qa.git@9ad45ef00bdf8108265f814be4e5a6d1740b8647#egg=ckanext_qa
-e git+http://github.com/datagovuk/ckanext-report.git@b67875b2a5b4c9b9ab2cf255f074226255ca9398#egg=ckanext_report
-e git+https://github.com/okfn/ckanext-spatial.git@adb712b1c2fc7e7969f864cdae6c1810a3ed8a68#egg=ckanext_spatial
click==6.7
decorator==4.2.1
fanstatic==0.12
Flask==0.12.4
Flask-Babel==0.11.2
FormEncode==1.3.1
funcsigs==1.0.2
GeoAlchemy==0.7.2
GeoAlchemy2==0.3.0
html5lib==1.0.1
idna==2.6
itsdangerous==0.24
Jinja2==2.8
json-table-schema==0.2.1
kombu==3.0.37
kombu-sqlalchemy==1.1.0
lxml==4.2.1
Mako==1.0.7
Markdown==2.6.7
MarkupSafe==1.0
messytables==0.15.2
nose==1.3.7
ofs==0.4.2
ordereddict==1.1
OWSLib==0.8.6
Pairtree===0.7.1-T
passlib==1.6.5
Paste==1.7.5.1
PasteDeploy==1.5.2
PasteScript==2.0.2
pbr==1.10.0
polib==1.0.7
progressbar==2.3
psycopg2==2.7.3.2
Pygments==2.2.0
Pylons==0.9.7
pyparsing==2.2.0
pysolr==3.6.0
python-dateutil==1.5
python-magic==0.4.15
pytz==2016.7
pyutilib.component.core==4.6.4
redis==2.10.6
repoze.lru==0.7
repoze.who==2.3
repoze.who-friendlyform==1.0.8
requests==2.11.1
Routes==1.13
rq==0.6.0
Shapely==1.5.16
simplejson==3.10.0
six==1.11.0
SQLAlchemy==1.1.11
sqlalchemy-migrate==0.10.0
sqlparse==0.2.2
Tempita==0.5.2
tzlocal==1.3
unicodecsv==0.14.1
urllib3==1.22
vdm==0.14
vine==1.1.4
webencodings==0.5.1
WebError==0.13.1
WebHelpers==1.3
WebOb==1.0.8
WebTest==1.4.3
Werkzeug==0.14.1
xlrd==1.1.0
zope.interface==4.3.2
Thanks in advance
Ross
From: ckan-dev [mailto:ckan-dev-bounces at lists.okfn.org] On Behalf Of Adrià Mercader
Sent: 14 February 2019 10:34
To: CKAN Development Discussions
Subject: Re: [ckan-dev] mod_wsgi error and mako templates
Hi Ross,
Sorry to hear you are having troubles with an update. Would be good to know as Stefan mentions if you used a package or source install. Did you restart both nginx and apache?
Mako is definitely not used by CKAN, but it's used as default by Pylons
I wonder if there was an issue during the installation of the requirements or the activation of the virtualenv.
I generally have my virtualenv requirements created in "/usr/lib/ckan/default/lib/" but your stacktrace shows ""/usr/lib/ckan/default/local/lib/"
Adrià
On Thu, 14 Feb 2019 at 10:58, Stefan Oderbolz <stefan.oderbolz at liip.ch<mailto:stefan.oderbolz at liip.ch>> wrote:
Hi Ross
is this an installation from source? Did you follow these steps: https://docs.ckan.org/en/2.7/maintaining/upgrading/upgrade-source.html ?
Especially the part with the virtualenv and "pip install --upgrade -r requirements.txt"?
Activate your virtualenv and check which pip packages are installed (run "pip freeze" to find out), check if Mako is installed.
- Stefan
On Thu, Feb 14, 2019 at 10:20 AM McDonaldR <McDonaldR at angus.gov.uk<mailto:McDonaldR at angus.gov.uk>> wrote:
Should have edited the subject line to keep the thread.
I can’t find any reference to “mako” anywhere and a web search turns up nothing related to plugins required for a “mako” template. What am I missing?
I also don’t understand how a simple patch release upgrade from 2.7.3 to 2.7.5 can completely break my site.
Ross
From: ckan-dev [mailto:ckan-dev-bounces at lists.okfn.org<mailto:ckan-dev-bounces at lists.okfn.org>] On Behalf Of McDonaldR
Sent: 13 February 2019 09:31
To: CKAN Development Discussions
Subject: Re: [ckan-dev] ckan-dev Digest, Vol 100, Issue 4
Production.ini file
#
# CKAN - Pylons configuration
#
# These are some of the configuration options available for your CKAN
# instance. Check the documentation in 'doc/configuration.rst' or at the
# following URL for a description of what they do and the full list of
# available options:
#
# http://docs.ckan.org/en/latest/maintaining/configuration.html
#
# The %(here)s variable will be replaced with the parent directory of this file
#
[DEFAULT]
# WARNING: *THIS SETTING MUST BE SET TO FALSE ON A PRODUCTION ENVIRONMENT*
debug = false
[server:main]
use = egg:Paste#http
host = 0.0.0.0
port = 5000
[app:celery]
#BROKER_BACKEND = redis
#BROKER_HOST = redis://localhost/1
#CELERY_RESULT_BACKEND = redis
#REDIS_HOST = 127.0.0.1
#REDIS_PORT = 6379
#REDIS_DB = 0
#REDIS_CONNECT_RETRY = True
ckan.redis.url = redis://localhost:6379/1
[app:main]
use = egg:ckan
full_stack = true
cache_dir = /tmp/%(ckan.site_id)s/
beaker.session.key = ckan
# This is the secret token that the beaker library uses to hash the cookie sent
# to the client. `paster make-config` generates a unique value for this each
# time it generates a config file.
beaker.session.secret = mnbvcxzlkjhgfdsapoiuytrewq
# `paster make-config` generates a unique value for this each time it generates
# a config file.
app_instance_uuid = qwertyuiopasdfghjkl
# repoze.who config
who.config_file = %(here)s/who.ini
who.log_level = warning
who.log_file = %(cache_dir)s/who_log.ini
# Session timeout (user logged out after period of inactivity, in seconds).
# Inactive by default, so the session doesn't expire.
# who.timeout = 86400
## Database Settings
sqlalchemy.url = postgresql://aaa:bbb@cccc/ckan_default
ckan.datastore.write_url = postgresql://aaa:bbb@cccc/datastore_default
ckan.datastore.read_url = postgresql://eee:fff@gggg/datastore_default
# PostgreSQL' full-text search parameters
ckan.datastore.default_fts_lang = english
ckan.datastore.default_fts_index_method = gist
## Site Settings
ckan.site_url = http://opendata.angus.gov.uk
#ckan.use_pylons_response_cleanup_middleware = true
## Authorization Settings
ckan.auth.anon_create_dataset = false
ckan.auth.create_unowned_dataset = false
ckan.auth.create_dataset_if_not_in_organization = false
ckan.auth.user_create_groups = true
ckan.auth.user_create_organizations = true
ckan.auth.user_delete_groups = true
ckan.auth.user_delete_organizations = true
ckan.auth.create_user_via_api = false
ckan.auth.create_user_via_web = false
ckan.auth.roles_that_cascade_to_sub_groups = admin editor
## Search Settings
ckan.site_id = default
solr_url = http://aaa.bbb.ccc.ddd:8983/solr
#ckan.simple_search = 1
## CORS Settings
# If cors.origin_allow_all is true, all origins are allowed.
# If false, the cors.origin_whitelist is used.
# ckan.cors.origin_allow_all = true
# cors.origin_whitelist is a space separated list of allowed domains.
# ckan.cors.origin_whitelist = http://example1.com http://example2.com
## Plugins Settings
# Note: Add ``datastore`` to enable the CKAN DataStore
# Add ``datapusher`` to enable DataPusher
# Add ``resource_proxy`` to enable resource proxying and get around the
# same origin policy
ckan.plugins = stats datastore resource_proxy text_view image_view recline_view recline_grid_view recline_graph_view$
# Define which views should be created by default
# (plugins must be loaded in ckan.plugins)
ckan.views.default_views = image_view text_view recline_view geojson_view geo_view
## Spatial / Geoview Settings
ckanext.geoview.ol_viewer.formats = wms wfs kml gml geojson
#ckanext.geoview.ol_viewer.default_feature_hoveron = true
ckanext.spatial.common_map.type = custom
ckanext.spatial.common_map.custom.url = http://tile.stamen.com/terrain/{z}/{x}/{y}.png<http://tile.stamen.com/terrain/%7bz%7d/%7bx%7d/%7by%7d.png>
ckanext.spatial.common_map.attribution = Map tiles by Stamen Design, under CC BY 3.0 Data by OpenStreetMap contribut$
## Archiver Settings
ckanext-archiver.archive_dir = /usr/share/nginx/html/resource_cache
ckanext-archiver.cache_url_root = http://opendata.angus.gov.uk/resource_cache/
## Front-End Settings
ckan.site_title = Angus Open Data
ckan.site_logo = /base/images/angus-logo-header-s5.png
ckan.site_description = Angus Council Open Data
ckan.site_intro_text = Access all of Angus Council's open datasets here.
ckan.favicon = /images/icons/ckan.ico
ckan.gravatar_default = identicon
ckan.preview.direct = png jpg gif
ckan.preview.loadable = html htm rdf+xml owl+xml xml n3 n-triples turtle plain atom csv tsv rss txt json
ckan.preview.text_formats = text plain
ckan.display_timezone = server
# package_hide_extras = for_search_index_only
#package_edit_return_url = http://another.frontend/dataset/<NAME<http://another.frontend/dataset/%3cNAME>>
#package_new_return_url = http://another.frontend/dataset/<NAME<http://another.frontend/dataset/%3cNAME>>
#ckan.recaptcha.version = 1
#ckan.recaptcha.publickey =
#ckan.recaptcha.privatekey =
#licenses_group_url = http://licenses.opendefinition.org/licenses/groups/ckan.json
# ckan.template_footer_end =
## Internationalisation Settings
ckan.locale_default = en_GB
ckan.locale_order = en pt_BR ja it cs_CZ ca es fr el sv sr sr at latin no sk fi ru de pl nl bg ko_KR hu sa sl lv
ckan.locales_offered =
ckan.locales_filtered_out = en_GB
## Feeds Settings
ckan.feeds.authority_name =
ckan.feeds.date =
ckan.feeds.author_name =
ckan.feeds.author_link =
## Storage Settings
ckan.storage_path = /var/lib/ckan/default
#ckan.max_resource_size = 10
#ckan.max_image_size = 2
## Datapusher settings
# Make sure you have set up the DataStore
ckan.datapusher.formats = csv xls xlsx tsv application/csv application/vnd.ms-excel application/vnd.openxmlformats-o$
ckan.datapusher.url = http://xx.yy.rr.ww:8800/
# Resource Proxy setting# Preview size limit, default: 1MB
ckan.resource_proxy.maxfile_size = 10485760# Size of chunks to read/write.
#ckan.resource_proxy.chunk_size = 4096
## Activity Streams Settings
ckan.activity_streams_enabled = true
ckan.activity_list_limit = 31
#ckan.activity_streams_email_notifications = true
#ckan.email_notifications_since = 2 days
ckan.hide_activity_from_users = %(ckan.site_id)s
## Email settings
email_to = xxxxxxx at xxxxxxxx
error_email_from = xxxxx at xxxxxxxxxx
smtp.server = xxxxxxxxxxxxx
smtp.starttls = False
smtp.user =
smtp.password =
smtp.mail_from = xxxxxxxxxxx at xxxxx
## Logging configuration
[loggers]
keys = root, ckan, ckanext
[handlers]
keys = console
[formatters]
keys = generic
[logger_root]
level = WARNING
handlers = console
[logger_ckan]
level = INFO
handlers = console
qualname = ckan
propagate = 0
[logger_ckanext]
level = DEBUG
handlers = console
qualname = ckanext
propagate = 0
[handler_console]
class = StreamHandler
args = (sys.stderr,)
level = NOTSET
formatter = generic
[formatter_generic]
format = %(asctime)s %(levelname)-5.5s [%(name)s] %(message)s
Ross McDonald | Geo-evangelist | Angus Council, People, IT | Angus House, Orchardbank Business Park, Sylvie Way, Forfar DD8 1AT | t: 01307 476419
From: ckan-dev [mailto:ckan-dev-bounces at lists.okfn.org] On Behalf Of Luke Tully
Sent: 12 February 2019 19:03
To: ckan-dev at lists.okfn.org<mailto:ckan-dev at lists.okfn.org>
Subject: Re: [ckan-dev] ckan-dev Digest, Vol 100, Issue 4
Could you post an obfuscated production.ini?
Luke
(204) 981-4494
________________________________
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Sent: Tuesday, February 12, 2019 6:00:02 AM
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Today's Topics:
1. Re: mod_wsgi error and mako templates (McDonaldR)
----------------------------------------------------------------------
Message: 1
Date: Mon, 11 Feb 2019 12:34:32 +0000
From: McDonaldR <McDonaldR at angus.gov.uk<mailto:McDonaldR at angus.gov.uk>>
To: CKAN Development Discussions <ckan-dev at lists.okfn.org<mailto:ckan-dev at lists.okfn.org>>
Subject: Re: [ckan-dev] mod_wsgi error and mako templates
Message-ID:
<7CCEF44D1C42854999B19B1EB27281F6016045B5D8 at SR2ORBHQ2K803.angus.gov.uk<mailto:7CCEF44D1C42854999B19B1EB27281F6016045B5D8 at SR2ORBHQ2K803.angus.gov.uk>>
Content-Type: text/plain; charset="us-ascii"
I've thought a bit more about this and searched the web for CKAN/mako template solutions with limited results.
Is mako a templating engine like Jinja2? Both Jinja2 and mako are installed in my CKAN.
What plugin should I be installing for mako to use? If nothing is installed should it not fall back to the default templating engine?
Ross
From: ckan-dev [mailto:ckan-dev-bounces at lists.okfn.org] On Behalf Of McDonaldR
Sent: 11 February 2019 11:35
To: ckan-dev at lists.okfn.org<mailto:ckan-dev at lists.okfn.org>
Subject: [ckan-dev] mod_wsgi error and mako templates
Hi List
I've just upgraded to the latest 2.7.5 patch release (it's never as easy as the docs make out!) and I'm getting a 500 error in the apache2 logs:
mod_wsgi (pid=5269): Target WSGI script '/etc/ckan/default/apache.wsgi' cannot be loaded as Python module.
mod_wsgi (pid=5269): Exception occurred processing WSGI script '/etc/ckan/default/apache.wsgi'.
Traceback (most recent call last):
File "/etc/ckan/default/apache.wsgi", line 10, in <module>
application = loadapp('config:%s' % config_filepath)
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", line 247, in loadapp
return loadobj(APP, uri, name=name, **kw)
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", line 272, in loadobj
return context.create()
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", line 710, in create
return self.object_type.invoke(self)
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/paste/deploy/loadwsgi.py", line 146, in invoke
return fix_call(context.object, context.global_conf, **context.local_conf)
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/paste/deploy/util.py", line 55, in fix_call
val = callable(*args, **kw)
File "/usr/lib/ckan/default/src/ckan/ckan/config/middleware/__init__.py", line 49, in make_app
**app_conf)
File "/usr/lib/ckan/default/src/ckan/ckan/config/middleware/pylons_app.py", line 55, in make_pylons_stack
app = pylons_app = CKANPylonsApp()
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/pylons/wsgiapp.py", line 80, in __init__
**def_eng['template_options'])
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/pylons/templating.py", line 393, in __init__
self.prepare(default_engine, template_root, **config)
File "/usr/lib/ckan/default/local/lib/python2.7/site-packages/pylons/templating.py", line 409, in prepare
'"%s" to use its functionality' % engine_name)
TemplateEngineMissing: Please install a plugin for "mako" to use its functionality
I'm running CKAN 2.7.5 on Ubuntu 14.04 with Apache2 and Nginx.
Permissions on apache.wsgi are
-rw-r--r-- 1 www-data root 405 Dec 12 12:25 apache.wsgi
Contents of apache.wsgi are
import os
activate_this = os.path.join('/usr/lib/ckan/default/bin/activate_this.py')
execfile(activate_this, dict(__file__=activate_this))
from paste.deploy import loadapp
config_filepath = os.path.join(os.path.dirname(os.path.abspath(__file__)), 'production.ini')
from paste.script.util.logging_config import fileConfig
fileConfig(config_filepath)
application = loadapp('config:%s' % config_filepath)
Any pointers gratefully received
Ross
Ross McDonald | Geo-evangelist | Angus Council, People, IT | Angus House, Orchardbank Business Park, Sylvie Way, Forfar DD8 1AT | t: 01307 476419
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End of ckan-dev Digest, Vol 100, Issue 4
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