[openbiblio-dev] Medline and UKPMC bibliography

Thu Feb 2 18:46:23 UTC 2012

On Thu, Feb 2, 2012 at 6:10 PM, Mark MacGillivray <mark at cottagelabs.com>wrote:

> We already have a basic ris parser, and it would accept any unknown short
> codes as keys anyway. If there are custom ones that people want to see
> added, they could be. Or our parser could beer taken and extended and run
> elsewhere.
> On Feb 2, 2012 6:05 PM, "Peter Murray-Rust" <pm286 at cam.ac.uk> wrote:
>
>>
>>
>> On Thu, Feb 2, 2012 at 3:07 PM, Tom Morris <tfmorris at gmail.com> wrote:
>>
>>> n Thu, Feb 2, 2012 at 4:07 AM, Peter Murray-Rust <pm286 at cam.ac.uk>
>>> wrote:
>>> > I am compiling a small bibliography by searching for "snowy owl" in
>>> UKPMC
>>> > and Pubmed. I haven't yet found how to export bibliography from UKPMC.
>>> The
>>> > Medline bibliography looks like:
>>> >
>>> > PMID- 19894598
>>> > OWN - NLM
>>> > STAT- MEDLINE
>>> > DA  - 20091109
>>> > DCOM- 20100319
>>> > IS  - 1026-3470 (Print)
>>> > IS  - 1026-3470 (Linking)
>>> > IP  - 5
>>> > DP  - 2009 Sep-Oct
>>> > TI  - [Red-breasted goose colonies on the Taimyr Peninsula: factors
>>> > responsible for the
>>> >       proximity of goose nests to nests of peregrine falcons,
>>> rough-legged
>>> > buzzards,
>>> >       and snowy owls].
>>> > PG  - 559-68
>>> >
>>> > This looks like RIS or an extended RIS. I think it will be valuable to
>>> > support it if we are going to use it as a central resource.
>>>
>>> This 2007 thread discussing how to import MEDLINE format into Zotero
>>> might help provide some suggestions on techniques and pointers to
>>> tools: http://forums.zotero.org/discussion/466/medline-format/
>>>
>>> Tom
>>>
>>
>>
>> I uploaded this to Bibserver and it's a complete mess. I think it is
because there is no TY record. I will hack and try again

-- 
Peter Murray-Rust
Reader in Molecular Informatics
Unilever Centre, Dep. Of Chemistry
University of Cambridge
CB2 1EW, UK
+44-1223-763069
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