[open-bibliography] Collaborative creation of a bibliography

Sat Feb 2 10:14:02 UTC 2013

On Fri, Feb 1, 2013 at 1:54 PM, Constantinescu Nicolaie <kosson at gmail.com>wrote:

> I guest this is what it should be landed on:

Yep, that is right. You should be able to access the JSON now for any
record by adding .json to the URL or negotiating for it on the command line:

http://bibsoup.net/record/4fe9cf4eaa0abcf8ae46dcfb53d8d9d3.json

(although for the time being the records include themselves in the
"_source" parameter which is not necessary and will be removed soon. Also
you can ignore things that start with "_". They are internal)

Mark

>
> {
>     "type":"text",
>     "title":
> "(E)-2-[(Furan-2-yl)methylidene]-7-methyl-2,3,4,9-tetrahydro-1H-carbazol-1-one",
>     "author":[
>         {"name": "Thiruvalluvar, A."},
>         {"name": "Archana, R."},
>         {"name": "Yamuna, E."},
>         {"name": "Rajendra Prasad, K.J."},
>         {"name": "Butcher, R.J."},
>         {"name": "Gupta, S.K."},
>         {"name": "Öztürk Yildirim, S."}
>     ],
>     "publisher":"International Union of Crystallography",
>     "id":"urn:issn:1600-5368",
>     "collection":"organic compounds",
>     "year": "2013",
>     "journal": {"name": "Acta Crystallographica Section E: Structure
> Reports Online"},
>     "license": [
>         {"type":"CC","url":"http://creativecommons.org/licenses/by/2.0/uk","description":"Creative
> Commons","jurisdiction":"UK"}
>     ],
>     "link": [
>         {"url":"http://journals.iucr.org/e/issues/2013/02/00/tk5183/"}
>     ],
>     "identifier": [
>         {"type":"doi","id":"doi:10.1107/S1600536812051203"}
>     ],
>     "note":"In the title molecule, C18H15NO2, the atoms in the
> carbazole unit deviate from planarity [maximum deviation from mean plane =
> 0.1317 (12) Å]. The pyrrole ring makes dihedral angles of
> 1.01 (8) and 18.56 (10)° with the benzene and furan rings,
> respectively. The cyclohexene ring adopts a half-chair conformation.
> In the crystal, pairs of N—H⋯O hydrogen bonds form an R22(10)
> ring. Molecules are further linked by C—H⋯O and
> C—H⋯π interactions, forming a three-dimensional
> network."
> }
>
> On 1 February 2013 15:44, Constantinescu Nicolaie <kosson at gmail.com>wrote:
>
>> Thank you for this! I will make some time to fiddle with the conversion
>> in php.
>> Also I tried to access records from BibSoup, but I get a nice Internal
>> Server Error every time. Can you fix that because I need more examples to
>> make myself a guiding mockup.
>>
>> Thanks!
>>
>>
>> On 31 January 2013 20:35, Peter Murray-Rust <pm286 at cam.ac.uk> wrote:
>>
>>>
>>>
>>> On Thu, Jan 31, 2013 at 4:17 PM, Constantinescu Nicolaie <
>>> kosson at gmail.com> wrote:
>>>
>>>> Dear Peter Murray-Rust,
>>>>
>>>> I'm very interested to follow your tutorial. Do you have a live link,
>>>> please?
>>>>
>>> https://dl.dropbox.com/u/6280676/XML%20in%20physical%20sciences.pptx
>>>
>>> Slides 8/9/10 and 18 are particularly relevant.  We need to convert the
>>> (very good) IUCr HTML/DublinCore metadata into BibJSON. Should be about a
>>> 10 - line program. I'll probably hack something in Java but Pythonistas or
>>> anyone else are welcome to help.
>>>
>>> The goal is something like: "I read a paper, I capture the bibliography
>>> and annotate it and save it for the world". I comment on it.Bit like what
>>> Connotea (dead) did or Mendeley (proprietary) does.
>>>
>>>
>>>> I believe BibJSON is one of the possible futures as long as nonSql
>>>> databases catch on.
>>>>
>>>
>>> They will.
>>>
>>>>
>>>> And, no, you are not mad! Can't wait for the outcome of your tutorial
>>>> if no live.
>>>>
>>>
>>> The madness was only the timescale. If we can create something in the
>>> next 2-3 days that would be wonderful as I can present on Monday (AU time)
>>>
>>>>
>>>> Thnak you,
>>>>
>>>> On 31 January 2013 05:41, Peter Murray-Rust <pm286 at cam.ac.uk> wrote:
>>>>
>>>>> I am giving a tutorial/workshop in about 18 hours on creating a
>>>>> scientific knowledgebase. I was thinking of getting each participant to
>>>>> create 1 simple bibliographic record by cutting and pasting from the
>>>>> Literature and then aggregating them.
>>>>>
>>>>> * is bibserver working? If not are there any existing examples of
>>>>> Bibserver/Bibsoup we can show?
>>>>> * can we upload individual records sequentially or do we have to
>>>>> bundle them.
>>>>> * they will probably cut and paste into an EtherPad - what is the best
>>>>> format? BibJSON?
>>>>> * is any Bibserver expert around at ca 0900 AU == 2200 UTC 2013-01-31
>>>>> and could be active on Etherpad?
>>>>> * am I completely mad?
>>>>>
>>>>> P.
>>>>>
>>>>> --
>>>>> Peter Murray-Rust
>>>>> Reader in Molecular Informatics
>>>>> Unilever Centre, Dep. Of Chemistry
>>>>> University of Cambridge
>>>>> CB2 1EW, UK
>>>>> +44-1223-763069
>>>>> _______________________________________________
>>>>> open-bibliography mailing list
>>>>> open-bibliography at lists.okfn.org
>>>>> http://lists.okfn.org/mailman/listinfo/open-bibliography
>>>>> Unsubscribe: http://lists.okfn.org/mailman/options/open-bibliography
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Constantinescu Nicolaie
>>>> Information Architect
>>>> http://www.kosson.ro
>>>> Open Acces Understanding
>>>> http://startad.kosson.ro
>>>> Information Science Sonar
>>>> http://sonar.kosson.ro
>>>> digital curator for Nostrum Monumentum
>>>> http://memoria.kosson.ro
>>>>
>>>> _______________________________________________
>>>> open-bibliography mailing list
>>>> open-bibliography at lists.okfn.org
>>>> http://lists.okfn.org/mailman/listinfo/open-bibliography
>>>> Unsubscribe: http://lists.okfn.org/mailman/options/open-bibliography
>>>>
>>>>
>>>
>>>
>>> --
>>> Peter Murray-Rust
>>> Reader in Molecular Informatics
>>> Unilever Centre, Dep. Of Chemistry
>>> University of Cambridge
>>> CB2 1EW, UK
>>> +44-1223-763069
>>>
>>> _______________________________________________
>>> open-bibliography mailing list
>>> open-bibliography at lists.okfn.org
>>> http://lists.okfn.org/mailman/listinfo/open-bibliography
>>> Unsubscribe: http://lists.okfn.org/mailman/options/open-bibliography
>>>
>>>
>>
>>
>> --
>> Constantinescu Nicolaie
>> Information Architect
>> http://www.kosson.ro
>> Open Acces Understanding
>> http://startad.kosson.ro
>> Information Science Sonar
>> http://sonar.kosson.ro
>> digital curator for Nostrum Monumentum
>> http://memoria.kosson.ro
>>
>
>
>
> --
> Constantinescu Nicolaie
> Information Architect
> http://www.kosson.ro
> Open Acces Understanding
> http://startad.kosson.ro
> Information Science Sonar
> http://sonar.kosson.ro
> digital curator for Nostrum Monumentum
> http://memoria.kosson.ro
>
> _______________________________________________
> open-bibliography mailing list
> open-bibliography at lists.okfn.org
> http://lists.okfn.org/mailman/listinfo/open-bibliography
> Unsubscribe: http://lists.okfn.org/mailman/options/open-bibliography
>
>
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