[open-science] BioSharing - short intro and interest in exploring collaboration

[Susanna-Assunta Sansone]

Many thanks, Peter.
 >> As we say on the site "In this/first phase/, each entry will be 
curated by the BioSharing team for consistency,
 > of what? :-)
basics things, as the external links and the 'Domain(s) covered'. On the 
latter, we are working to create a vocabulary to classify these (many 
exists and the plan is to reuse them, as much as possible).
Susanna


On 10/08/2011 15:40, Peter Murray-Rust wrote:
>
>
> On Wed, Aug 10, 2011 at 3:33 PM, Susanna-Assunta Sansone 
> <sa.sansone at gmail.com <mailto:sa.sansone at gmail.com>> wrote:
>
>     Hi Peter,
>
>     happy to help, as we can, if you also believe we can list this in
>     the BioSharing catalogue. There are 2 ways to add these:
>     - via simple form at: http://biosharing.org/contact (individuals
>     submitting are also acknowledged - along with collaborators and
>     their logo/links- at http://biosharing.org/communities)
>     - or if somebody has a list already, e.g. in an spreadsheet, we
>     can quickly 'curate' it and batch loaded these.
>
>
> We have a list in an HTML table:
> http://www.ch.ic.ac.uk/chemime/
>
> This is probably the most up to date.
>
>     As we say on the site "In this/first phase/, each entry will be
>     curated by the BioSharing team for consistency,
>
>
> of what? :-)
>
>     and individual contributors will be acknowledged. In the/next
>     phases/, we will allow individuals (nominated by groups developing
>     and maintaining policies or standards) to login and edit/update
>     relevant entries. The final goal is to ensure the catalogues
>     represents an up-to-date reference set for those seeking
>     information on policies and standards."
>
>
> This will be useful. We can either use Shapado or your own wiki, etc.
>
>
>     Thanks,
>     Susanna
>
>
>     On 10/08/2011 15:24, Peter Murray-Rust wrote:
>>
>>
>>     On Wed, Aug 10, 2011 at 3:10 PM, Susanna-Assunta Sansone
>>     <sa.sansone at gmail.com <mailto:sa.sansone at gmail.com>> wrote:
>>
>>
>>         > I would think BioSharing could also act as registry for
>>         formats in chemistry.
>>
>>
>>         Sure and actually with e.g. NMR being used in metabolomics
>>         and MS in both  metabolomics and proteomics, these do fit
>>         into the bioarea too.
>>
>>
>>     Let's just go ahead as quickly as possible. Much of the chemistry
>>     is actively used in bio-informatics - e.g. in ChEBI. FWIW see our
>>     Chemical MIME (http://www.ch.ic.ac.uk/chemime/iupac.html ) which
>>     has worked well and continues to work in chemistry.
>>
>>     There's also lots of discussion on
>>     http://blueobelisk.shapado.com/ and the Blue Obelisk mailing list.
>>
>>     P.
>>
>>
>>
>>     -- 
>>     Peter Murray-Rust
>>     Reader in Molecular Informatics
>>     Unilever Centre, Dep. Of Chemistry
>>     University of Cambridge
>>     CB2 1EW, UK
>>     +44-1223-763069
>
>     -- 
>     Susanna-Assunta Sansone, PhD
>
>     Team Leader
>     University of Oxford
>
>     Projects:www.isa-tools.org  <http://www.isa-tools.org>|www.mibbi.org  <http://www.mibbi.org>|www.biosharing.org  <http://www.biosharing.org>
>
>     University of Oxford           Tel: +44(0)1865 610622
>     Oxford e-Research Centre       Fax: +44(0)1865 610612
>     7 Keble Road, Oxford           skype: susanna-a.sansone
>     OX1 3QG, UKuk.linkedin.com/in/sasansone  <http://uk.linkedin.com/in/sasansone>
>     --
>
>
>
>
> -- 
> Peter Murray-Rust
> Reader in Molecular Informatics
> Unilever Centre, Dep. Of Chemistry
> University of Cambridge
> CB2 1EW, UK
> +44-1223-763069

-- 
Susanna-Assunta Sansone, PhD

Team Leader
University of Oxford

Projects: www.isa-tools.org|www.mibbi.org|www.biosharing.org

University of Oxford           Tel: +44(0)1865 610622
Oxford e-Research Centre       Fax: +44(0)1865 610612
7 Keble Road, Oxford           skype: susanna-a.sansone
OX1 3QG, UK                    uk.linkedin.com/in/sasansone
--

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